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1 |
Nir Atias and Roded Sharan. An Algorithmic Framework for Predicting Side-Effects of Drugs |
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2 |
Ferhat Ay and Tamer Kahveci. SubMAP: Aligning metabolic pathways with subnetwork mappings |
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3 |
Sivan Bercovici, Itai Sharon, Ron Pinter and Tomer Shlomi. Pathway-Based Functional Analysis of Metagenomes |
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4 |
Sivan Bercovici and Dan Geiger. Admixture Aberration Analysis: Application to mapping in admixed population using pooled DNA |
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5 |
José Caldas and Samuel Kaski. Hierarchical Generative Biclustering for MicroRNA Expression Analysis |
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6 |
Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance and Mehmet Koyuturk. Subnetwork State Functions Define Dysregulated Subnetworks in Cancer |
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7 |
Manfred Claassen, Ruedi Aebersold and Joachim M. Buhmann. Proteome Coverage Prediction for Integrated Proteomics Datasets |
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8 |
Timothy Danford, Robin Dowell and David Gifford. Discovering Regulatory Overlapping RNA Transcripts |
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9 |
Constantinos Daskalakis and Sebastien Roch. Alignment-Free Phylogenetic Reconstruction |
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10 |
Jianxing Feng, Wei Li and Tao Jiang. Inference of Isoforms from Short Sequence Reads |
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11 |
Bjarni Halldorsson, Derek Aguiar, Ryan Tarpine and Sorin Istrail. The Clark Phase-able Sample Size Problem: Long-range Phasing and Loss of Heterozygosity in GWAS |
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12 |
Michael Hirsch, Bernhard Schoelkopf and Michael Habeck. A new algorithm for improving the resolution of cryo-EM density maps |
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13 |
Richard Jang, Xin Gao and Ming Li. Towards Automated Structure-based NMR Assignment |
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14 |
Kyowon Jeong, Sangtae Kim, Nuno Bandeira and Pavel Pevzner. Gapped Spectral Dictionaries and Their Applications for Databases Searches of Tandem Mass Spectra |
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15 |
Wei-Chun Kao and Yun S. Song. naiveBayesCall: An efficient model-based base-calling algorithm for high-throughput sequencing |
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16 |
David Kelley and Carl Kingsford. Extracting between-pathway models from E-MAP interactions using expected graph compression |
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17 |
Yoo-Ah Kim, Stefan Wuchty and Teresa Przytycka. Simultaneous Identification of Causal Genes and Dys-regulated Pathways in Complex Diseases |
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18 |
Geoffrey Koh, David Hsu and P. S. Thiagarajan. Incremental Signaling Pathway Modeling by Data Integration |
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19 |
Adam Kowalczyk, Justin Bedo, Thomas Conway and Bryan Beresford-Smith. Poisson Margin Test for Normalisation Free Significance Analysis of NGS Data |
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20 |
Christos Kozanitis, Chris Saunders, Semyon Kruglyak, Vineet Bafna and George Varghese. Compressing genomic sequence fragments using SlimGene |
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21 |
Fumei Lam, Charles H. Langley and Yun S. Song. On the Genealogy of Asexual Diploids |
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22 |
Jonathan Laserson, Vladimir Jojic and Daphne Koller. Genovo: De Novo Assembly For Metagenomics |
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23 |
Seunghak Lee, Eric Xing and Michael Brudno. MoGUL: Detecting Common Insertions and Deletions in a Population |
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24 |
Navodit Misra, Guy Blelloch, R Ravi and Russell Schwartz. Generalized Buneman pruning for inferring the most parsimonious multi-state phylogeny |
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25 |
Laurent Noé, Marta Gîrdea and Gregory Kucherov. Seed design framework for mapping AB SOLiD reads |
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26 |
Bogdan Pasaniuc, Noah Zaitlen and Eran Halperin. Accurate estimation of expression levels of homologous genes in RNA-seq experiments |
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27 |
Benedict Paten, Mark Diekhans, Jian Ma, Bernard Suh and David Haussler. Cactus Graphs for Genome Comparisons |
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28 |
Yu Peng, Henry C.M. Leung, SM Yiu and Francis Chin. IDBA - A Practical Iterative de Bruijn Graph De Novo Assembler |
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29 |
Sheila Reynolds, Zhiping Weng, Jeff Bilmes and William Stafford Noble. Predicting nucleosome positioning using multiple evidence tracks |
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30 |
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Raschid and Xiao-Ning Zhang. Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs |
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31 |
Raheleh Salari, Mathias Mohl, Sebastian Will, S. Cenk Sahinalp and Rolf Backofen. Time and space efficient RNA-RNA interaction prediction via sparse folding |
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32 |
Manu Setty, Alexander Gusev and Itsik Pe'er. HLA type inference via haplotypes identical by descent |
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33 |
Fabio Vandin, Eli Upfal and Benjamin Raphael. Algorithms for Detecting Significantly Mutated Pathways in Cancer |
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34 |
Christian Widmer, Jose Miguel Leiva-Murillo, Yasemin Altun and Gunnar Rätsch. Leveraging Sequence Classification by Taxonomy-based Multitask Learning |
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35 |
Yu-Wei Wu and Yuzhen Ye. A novel abundance-based algorithm for binning metagenomic sequences using l-tuples |
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36 |
Jianyang Zeng, Pei Zhou and Bruce Donald. A Markov Random Field Framework for Protein Side-Chain Resonance Assignment |
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