A1

Sarah Aerni, Xiao Liu, Fuhui Long, Hanchuan Peng, Eugene Myers, Stuart Kim and Serafim Batzoglou. Gene Expression Analysis at the Single-Cell Resolution in C. elegans

A2

Payal Agarwal, Ruchi Tiwari, Anshita Goel, Shehwaj Anwar, Anil Kumar and Gohar Taj. Comparative in-silico docking analysis of MAPK3 of Arabidopsis thaliana and Brassica juncea with available defense protein in TAIR database

A3

Renato J. Alves, Ana Abecasis, Mónica Serrano, Catarina Fernandes, Anabela L. Isidro, Adriano O. Henriques and Jose B. Pereira-Leal. SporeDB an evolutionary systems biology platform for functional and evolutionary studies of bacterial sporulation

A4

Nadia Anwar, Gary Bader, Emek Demir, Igor Rodchenkov and Chris Sander. Sharing biological pathway information using the BioPAX exchange language

A5

Mehmet Serkan Apaydin, Bulent Catay, Nicholas Patrick and Bruce Randall Donald. NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments

A6

Helen Andrade Arcuri, Jorge Kalil, Mario Sergio Palma and Fabio Fernandes Morato Castro. The web server AllergenNet: database and analysis resource for allergenic proteins

A7

Ugur Ayan and Galip Cansever. Drug/NonDrug Clustering Using Semi-Supervised Learning Approaches

A8

Ricardo Antunes Azevedo, Bertha Dévore Agurto Berdejo, Salete Aparecida Gaziola and Leonardo Oliveira Medici. Temporal Expression of Genes Involved in Threonine Metabolism in Developing Quality Protein Maize Seeds

A9

Michael Baitaluk and Julia Ponomarenko. IntegromeDB: semantic integration of Transcriptional Regulation Data

A10

Nuno Barbosa-Morais, Mark Dunning, Shamith Samarajiwa, Christina Curtis, Andy Lynch and Simon Tavaré. Re-annotation of microarray probes improves the interpretation of cancer gene expression data

A11

Christian Baudet and Zanoni Dias. Partial enumeration of traces of solutions for the problem of sorting by signed reversals

A12

Clara Bermudez-Santana, David Langenberger, Steve Hoffmann and Peter F. Stadler. Searching tRNA processing patterns in transcriptome sequencing data

A13

Lucy Stead, Ian Wood and David Westhead. Learning from Voltage-Gated Potassium Channel Variants

A14

Andrea Bisognin, Emilia Maria Cristina Mazza, Francesco Ferrari, Mattia Forcato, Silvia Pizzini, Claudia Gemelli, Stefania Bortoluzzi and Silvio Bicciato. The Virtual Chip: a new approach for the integration of different oligonucleotide arrays

A15

Valentina Boeva, Isabelle Janoueix-Lerosey, Bruno Zeitouni, Stéphanie Jouannet, Alex Cazes, Gudrun Schleiermacher, Emmanuel Barillot and Olivier Delattre. Characterization of genomic structural variations in a neuroblastoma cell line using mate-pair sequencing

A16

Regina Bohnert, Jonas Behr, Andre Kahles, Geraldine Jean and Gunnar Rätsch. Online Quantitative Transcriptome Analysis

A17

Jeremie Bourdon, Solenne Carat and Mireille Regnier. Computing the p-values of selections in genome-wide studies

A18

Andrzej Brodzik. Combinatorial model of DNA sequence

A19

Jan Budczies, Daniel Kosztyla and Carsten Denkert. Cancerclass an R package for construction and validation of tumor classifiers from high-dimensional molecular data

A20

Dulce Calçada, Susana Vinga and Arlindo Oliveira. An S-System Model of the Saccharomyces cerevisiae FLR1 Regulatory Network

A22

Pedro Chan and Jim Warwicker. Evidence for the adaptation of protein pH-dependence to subcellular pH

A23

Jadwiga Bienkowska, Gul Dalgin, Franak Batliwalla, Norm Allaire, Ronenn Roubenoff, Peter Gregersen and John Carulli. Convergent Random Forest predictor: methodology for predicting drug response from genome-scale data applied to anti-TNF response

A24

Rui Chang. A Novel Knowledge-driven Systems Biology Approach for Phenotype Prediction Upon Genetic Intervention

A25

Wenling Chang, Keri Sarver, Brandon Higgs, Timothy Read, Nichole Nolan, Kimberly Bishop-Lilly and Shanmuga Sozhamannan. PhenoDB: A web-based database management system for storage, retrieval, visualization, and analysis of OmniLog phenotypic microarray data

A26

Mario Fasold, Hans Binder and Peter Stadler. The 'GGG'-bias of Microarray Data - Analysis and Correction

A27

Tiffany J. Chen, Matthew R. Clutter, Garry P. Nolan and Serafim Batzoglou. A semi-supervised approach to profiling the effect of cancer drugs on leukemic cells

A28

Doris Chen, Frederike von Pelchrzim, Jennifer Boots, Bob Zimmermann, Katarzyna Matylla and Renée Schroeder. Finding protein-binding RNA sequences by Genomic Selex and subsequent deep sequencing

A29

Warren Cheung, BF Francis Ouellette and Wyeth W. Wasserman. Predicting Gene-Disease Relationships via Gene Characteristic Profiles Constructed from Text Analysis

A30

Mario Fasold and Hans Binder. The 3'-bias of expression values and RNA degradation - quality control and correction in microarray analysis

A31

Muriel Cocaign-Bousquet. Lactococcus lactis adaptation: a multi level regulation system

A32

Barak Raveh, Nir London and Ora Schueler-Furman. Peptides: from Sub-angstrom Modeling to Specific Inhibition

A33

Tali Raveh-Sadka, Michal Levo, Uri Shabi, Leeat Keren, Maya Lotan-Pompan, Boaz Shany, Danny Zeevi, Eilon Sharon, Adina Weinberger and Eran Segal. Transcriptional Lego-Tuning Expression Levels in a Predictable Manner by Manipulating Promoter Building Blocks

A34

Helena Deus, Michelle Payton, Cintia Palu, Miria Coelho and Jonas Almeida. Experimentation and Discovery using Semantic Web and JavaScript

A35

Piroska Devay, Brigitte Wiedmann, Alex Gaither, Teresa Compton and Steven Projan. Host factors involved in HCV replication and coordinated metabolic changes

A36

Hugo Devillers, Meriem El Karoui and Sophie Schbath. Evaluating the length of significant word matches in biological sequences

A37

João ML Dias, Ana P Teixeira and Rui Oliveira. Projection to Latent Pathways (PLP): a hybrid method for metabolic network reconstruction

A38

Yoan Diekmann, Marc Gouw, Filipe Tavares-Cadete, Luisa Rodrigues and José B. Pereira-Leal. Extensive resource of Rab repertoires reveals trends in evolution of cellular trafficking

A39

Norbert Dojer, Przemyslaw Biecek and Jerzy Tiuryn. Identification of cis-regulatory modules in Drosophila melanogaster

A40

Guénola Drillon, Alessandra Carbone and Gilles Fischer. Reconstruction of rearrangement history and ancestral genomes in yeast based on synteny packs

A41

Steven Essinger and Gail Rosen. Benchmarking BLAST Accuracy of Genus/Phyla Classification of Metagenomic Reads under a Query Sequence Error Model and an Incomplete Training Database

A42

Tanima Dubey, Mark Girolami and Karin Oien. Identification of Representative Genes Underlying Gene Signatures

A43

Francisco Fernandes, Luísa Pereira and Ana T. Freitas. CIRCALIGN: An efficient algorithm to align multiple circular genomes

A44

Pedro Fernandes. GTPB - deploying bioinformatics skills through hands-on training

A45

Alexandre P. Francisco, Joana P. Gonçalves and Sara C. Madeira. TFRank: A framework to unravel relevant regulations in regulatory networks using diffusion ranking

A46

Alexandre P. Francisco, Cátia Vaz, José Melo-Cristino, Mario Ramirez and João Carriço. Phyloviz: Visualizing epidemiological information on phylogenetic relationships inferred by goeBURST algorithm

A47

Alexandre P. Francisco, Arlindo L. Oliveira and Ana T. Freitas. A graph based approach to motif clustering

A48

Alberto de la Fuente, Andrea Pinna, Nicola Soranzo and Ina Hoeschele. SysGenSIM: simulating large Systems Genetics datasets for the evaluation of analysis methods

A49

Francesco Gandolfi, Cristina Valensisi, Francesco Ferrari, Cristina Benatti, Enrica Roncaglia, Nicoletta Brunello, Fabio Tascedda and Silvio Bicciato. A combined approach for analyzing exon-profiling data from functionally relevant areas of the central nervous system

A50

Sara Garcia, Armando Pinho, João Rodrigues, Carlos Bastos and Paulo Ferreira. Minimal absent words in genomic sequences

A51

Paulo Gaspar, José Luís Oliveira, Jörg Frommlet, Gabriela Moura and Manuel A. S. Santos. A gene multi-optimization tool as novel approach to heterologous expression

A52

Piotr Gawron, Jacek Błażewicz, Marta Kasprzak, Micha Kierzynka and Wojciech Frohmberg. GPU computation in DNA assembly algorithm

A53

Joana P. Gonçalves, Sara C. Madeira and Yves Moreau. Network-based disease gene prioritization: Are functional associations a promising alternative to protein-protein interactions?

A54

Marc Gouw, Zita Carvalho-Santos, Filipe Tavares-Cadete, Joana Pinto, Neuza Matias, Juliette Azimzadeh, Keith Gull, Michel Bornens, Mónica Bettencourt-Dias and José B. Pereira-Leal. CentrioleDB: a community resource for studying centriolar evolution

A55

Ana Graça, Inês Lynce, João Marques-Silva and Arlindo Oliveira. On the Accuracy of Haplotype Inference Methods

A56

Marcel Grunert, Markus Schueler, Anne-Katrin Emde, Ilona Dunkel and Silke R. Sperling. Analysis and prediction of microRNAs in the human heart based on next-generation sequencing data

A57

Young Soo Song, Ju Han Kim, Chan Hee Park and Hee Joon Chung. Design and Application of Statistically Supported Semantic Tissue Microarray Database

A58

Andras Hartmann, Susana Vinga and Joao Miranda Lemos. System identification of metabolic networks using Nonlinear Bayesian filtering

A59

Ernesto Iacucci and Yves Moreau. Multiple Kernel Learning on Imbalanced Data: Creating a Receptor - Ligand Classifier

A60

Sorin Istrail, Bjarni Halldorsson, Derek Aguiar and Ryan Tarpine. The Clark Phase-able Sample Size Problem: Long-range Phasing and Loss of Heterozygosity in GWAS

A61

Masahiro Ito and Yusuke Ishido. Prediction of transcriptional regulatory region using using independent component analysis and support vector machine

A62

Aleksander Jankowski, Wenjie Sun, Shyam Prabhakar and Jerzy Tiuryn. Predicting TF binding sites in mouse ES cells in the presence of nucleosomes

A63

Sibel Kalyoncu, Ozlem Keskin and Attila Gursoy. A Machine Learning Approach for Prediction of PDZ Domain Interactions

A64

Krishnakumar Kandaswamy, Pugalenthi Ganesan, Enno Hartmann, Steffen Möller, Prasanna Kolatkar, Ponnuthurai Nagaratnam Suganthan and Thomas Martinetz. Prediction of subcellular localization of apoptotic protein with Genetic Algorithms and Support-Vector-Machines

A65

Wei-Chun Kao and Yun Song. An Error Correction Algorithm for High-throughput Short-read Sequencing Technologies

A66

Amit Kaushal, Weijun Qian, Hong Gao, Yuping Zhang, David Camp, Wenzhong Xiao, Richard Smith and Ronald Davis. Quantifying Protein Abundance in Clinical Mass Spectrometry Experiments

A67

David Kelley and Steven Salzberg. Clustering metagenomic sequences with interpolated Markov models

A68

Mariann Micsinai, Fabio Parisi and Yuval Kluger. QESEQ: a Novel Non-Parametric Approach to Analyze CHIP-SEQ Data

A69

Michael Schnall-levin, Yong Zhao, Norbert Perrimon and Bonnie Berger. Evidence for Widespread microRNA Targeting in Drosophila Coding Regions

A70

Patrick Schmid, Nathan Palmer, Isaac Kohane and Bonnie Berger. Mining GEO using UMLS

A71

Brandi Cantarel, Emmanuel Mongodin and Claire Fraser-Liggett. Exploration of Stategies for Metagenomic Analysis

A72

Sorabh Singhal and Suneet Dashora. In silico structural analysis of Lamin protein

A73

Florian Schatz and Manfred Schimmler. A priori estimation of contig length distribution of short-read sequencing

A74

Michael Baym, Elleard Heffern, Norbert Perrimon, Bonnie Berger and Chris Bakal. Modeling and Inference of the Rho Signaling Network

A75

Rohit Singh, Daniel Park, Jinbo Xu, Raghavendra Hosur and Bonnie Berger. Struct2Net: a Web-Service to Predict Protein-Protein Interactions Using a Structure-based Approach

A76

Rachael Hageman, Maglie Leduc, Beverly Paigen, Ron Korstanje and Gary Churchill. Bayesian Inference of the Genotype-Phenotype Network Topology

A77

An Berges, Yiming Cheng, Christelle Haziza, Julia Hoeng, Stefan Lebrun, Rosemarie Lichtner, Michael Lietz, Walter Schlage and Manuel Peitsch. Application of a Dynamic Model of Apoe-/- Mouse Atherosclerosis to Assess the Impact of Cigarette Smoke Exposure on Endothelial Cell Function

A78

Katsuhiko Murakami, Makoto Ogawa, Takashi Gojobori and Tadashi Imanishi. PubMedScan: a web-based recommender of PubMed articles

A79

Myungguen Chung, Hwajung Seo and Kiejung Park. An Integrated Program for the Analysis of Protein-Protein Interaction with Cellular Localization

A80

Pawel P. Labaj, Peter Sykacek and David P. Kreil. Advanced models help identify conserved repeats

B1

Nurul Bahiyah Ahmad Khairudin, Habibah Wahab, Mohd Razip Samian and Nazalan Najimudin. The Effects of Gas Phase on the Protein Conformation: A Structure Prediction Study on Eotaxin-3 Cytokine

B2

Ki-Yeol Kim and In-Ho Cha. Use of public microarray database for identifying significant genes associated with Oral Squamous Cell Carcinoma

B3

Luke A. D. Hutchison, Bonnie A. Berger and Isaac S. Kohane. Whole-organism integrative expressome for C. elegans enables in silico study of developmental regulation

B4

Po-Ru Loh, Michael Baym and Bonnie Berger. CaBLAST: Accelerated local alignment and search via compression

B5

Geoffrey Koh, Ariana Low, Daren Poh, Say Kong Ng, Victor Vai Tak Wong and Dong Yup Lee. Integrated framework for Sequence and Functional Classification of C-type Lectins

B6

Pavel Kuksa and Vladimir Pavlovic. Efficient motif finding algorithms for large-alphabet inputs

B7

Abdoulaye Diallo, Lawrence David, Mattew D Rasmussen, Manolis Kellis and Eric J Alm. Maximum Likelihood method for gene tree reconstruction and reconciliation to a known species tree in the presence of duplication, loss and Horizontal gene transfer

B8

Glenn Lawyer, Andre Altmann, Alexander Thielen and Thomas Lengauer. Mutational pathways to reverse transcriptase inhibitor resistance in HIV

B9

Byungwook Lee. Identification of protein homology using domain architecture comparison

B10

Shiao-Wen Li, Sung-Jiang Chen and Chuan-Hsiung Chang. BGEdb: A Multiscale Bacterial Gene Expression Database for Integrative Dynamics

B11

Katharina Jahn and Jens Stoye. A practical approach to approximate gene cluster detection

B12

Pedro Lopes and José Luís Oliveira. An Integrated View for Human Variome Information

B13

Tobias Mann and Christopher Saunders. Binomial Confidence Intervals Improve Sequencing Quality Scores

B14

Vinicius Maracaja-Coutinho, João C. Setubal and Sergio Verjovski-Almeida. Genome-wide in silico identification of human long non-coding RNAs and expression analysis of these transcripts in liver

B15

Abdoulaye Diallo. A Generalized Hidden Markov Model for Ancestral Sequence Estimation and Multiple sequence alignment Refinement

B16

Loredana Martignetti, Karine Laud-Duval, Franck Tirode, Olivier Delattre, Emmanuel Barillot and Andrei Zinovyev. Independent component analysis to investigate microRNA role in Ewing's sarcoma.

B17

Jeane Melo, George Cavalcanti and Geórgia Barros. New Directions To The Protein Secondary Structure Prediction Problem

B18

Vesna Memisevic, Tijana Milenkovic and Natasa Przulj. Complementarity of network and sequence information in homologous proteins

B19

Nuno Mendes, Ana Freitas, Ana Vasconcelos and Marie-France Sagot. CRAVELA: a framework to identify and evaluate miRNA regulatory modules

B20

Wieslawa Mentzen. Quest for epigenetic determinants of local coexpression clusters in plants

B21

Caroline C. Friedel, Lars Dölken, Zsolt Ruzsics, Ulrich H. Koszinowski and Ralf Zimmer. Conserved regulatory processes revealed by RNA half-life

B22

Utkur Mirsaidov, Jeff Comer, Deqiang Wang, Winston Timp, Greg Timp and Aleksei Aksimentiev. Toward Rapid Sequencing of Double-Stranded DNA Using a Nanopore Trap

B23

Arne Müller, Philippe Marc, Virgile Richard and David Heard. Tools and methods to create ontologies and curate vocabularies for pre-clinical safety: Towards an industry standard pathology findings ontology?

B24

Kristen M Naegle, Roy E. Welsch, Michael B. Yaffe, Forest M. White, Douglas A. Lauffenburger, Bruce Tidor and Bracken King. High-throughput quantitative phosphoproteomic dataset analysis using combinatorial parametric unsupervised learning

B25

Mariam Nersisyan and Deendayal Dinakarpandian. Ethnic Polymorphism Evaluation Tool (E-Pet)

B26

Daniela Nitsch, Joana P. Goncalves, Fabian Ojeda and Yves Moreau. Prioritizing Candidate Genes by Network Analysis of Differential Expression using Machine Learning Approaches

B27

Daniela Nitsch, Léon-Charles Tranchevent, Francisco Bonachela Capdevila, Bart de Moor, Patrick De Causmaecker and Yves Moreau. A guide to web tools to prioritize candidate genes

B28

Tae-kyung Kim, Jeong-Su Oh, BoKyeng Hou and SangHyuk Lee. A web-based retrieval system using a multi-dimensional analysis technique for discovering gene-disease-drug relationships in PubMed literature

B29

Leonor Palmeira, Simon Penel, Vincent Lotteau, Chantal Rabourdin-Combe and Christian Gautier. PhEVER: a database for the global exploration of virus-host evolutionary relationships

B30

Joshua Paul and Yun Song. A Principled Approach to Deriving Approximate Conditional Sampling Distributions in Population Genetics Models with Recombination

B31

José Pedro Pinto, Miguel Rocha and Isabel Rocha. A Software Tool for the Topological Analysis of Metabolic Networks under a Metabolic Engineering Perspective

B32

Snehit Prabhu and Itsik Pe'er. A Monte Carlo Sampling Algorithm To Discover Complex Interactions In Disease Association Studies

B33

Natasa Przulj, Oleksii Kuchaiev, Tijana Milenkovic, Vesna Memisevic and Wayne Hayes. Topological network alignment uncovers biological function and phylogeny

B34

Natasa Przulj, Oleksii Kuchaiev, Aleksandar Stevanovic, Marija Rasajski, Wayne Hayes and Desmond Higham. Geometric evolutionary dynamics and de-noising of protein-protein interaction networks

B35

Filipe J. Ribeiro, Joshua Burton, Iain A. MacCallum, Sante Gnerre, Dariusz Przybylski, Bruce Walker, Ted Sharpe, Giles Hall, Carsten Russ, Chad Nusbaum and David Jaffe. A general method for assembling genomes from Illumina data

B36

Tiago Rito, Zi Wang, Charlotte Deane and Gesine Reinert. How threshold behaviour affects the use of subgraphs for network comparison

B37

Jesse M. Rodriguez, Sofia Kyriazopoulou - Panagiotopoulou, Stephen D. Guo, Daniel E. Newburger and Serafim Batzoglou. GEDI: A sensitive method for detecting insertions and deletions with paired-end sequencing

B38

Gail Rosen, Steve Essinger and Diamantino Caseiro. Detecting Novel Species and Genera from Short Next-Gen Reads

B39

Agnieszka Rybarczyk, Marta Kasprzak, Marek Figlerowicz and Jacek Błażewicz. Branch and cut algorithm for the RNA Partial Degradation Problem (RNA PDP)

B40

M.D. Santos, J.A.P. Paiva, A. Gomes, P.G.S. da Fonseca, J.A. Carriço and A.T. Freitas. GEDI KDBIO Genomic Data Information System

B41

Ravi Vijaya Satya, Kamal Kumar, Nela Zavaljevski and Jaques Reifman. Bioinformatics Software System for Design of Pathogen Diagnostic Assays

B42

Martin Schaefer and Miguel A. Andrade-Navarro. Evolution and function of CAG/glutamine-repeats

B43

Marc A. Schaub, Irene Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte and Serafim Batzoglou. A Classifier-based approach to identify genetic similarities between diseases

B44

Markus Schueler, Marcel Grunert, Jenny Schlesinger, Jenny J. Fischer, Qin Zhang, Ilona Dunkel and Silke R. Sperling. Analyzing the Cardiac Transcription Network Driven by the Interplay of Transcription Factors, Histone Modifications and microRNAs

B45

Marcel Schulz, Daniel Zerbino, Ewan Birney and Martin Vingron. De novo reconstruction of transcriptomes with Oases

B46

Ron Shamir, Yonit Halperin, Chaim Linhart and Igor Ulitsky. Allegro: Analyzing expression and sequence in concert to discover regulatory programs

B47

Dr Lukeman Adelaja Joseph Shittu, Remilekun Keji Shittu and Prof Pius Igbigbi. Computational Molecular Docking Studies Of Sesame Lignans Derivatives as Selective Endothelial Nitric Oxide Synthetase Modulators (SeNOSM).

B48

Suzanne Sindi, Selim Önal, Luke Peng, Anna Ritz, Hsin-Ta Wu and Benjamin Raphael. INTEGRATING MULTIPLE SIGNALS TO IDENTIFY STRUCTURAL VARIANTS IN THE HUMAN GENOME

B49

Marina Sirota, Marc A. Schaub, Serafim Batzoglou, William H. Robinson and Atul J. Butte. Autoimmune Disease Classification by Inverse Association with SNP Alleles

B50

Armando Solis. Information-Optimized Query-Specific Contact Potentials for Protein Structure Prediction

B51

Lucy Stead, Ian Wood and David Westhead. KvSNP: Learning from Voltage-Gated Potassium Channel Variants

B52

Raghavendra Hosur, Jinbo Xu, Jadwiga Bienkowska and Bonnie Berger. iWRAP: An interface threading approach with application to prediction of cancer related protein-protein interactions

B53

Marta Szachniuk, Mariusz Popenda, Marek Blazewicz, Szymon Wasik, Edmund K. Burke, Jacek Błażewicz and Ryszard W. Adamiak. RNA FRABASE 2.0. An intelligent tool for the exploration of RNA structure parameter space.

B54

Ewa Szczurek, Florian Markowetz, Irit Gat-Viks, Przemyslaw Biecek, Jerzy Tiuryn and Martin Vingron. Gene regulation re-wired upon DNA damage.

B55

Hung x. Ta, Liisa Holm and Seung Kee Han. Functional dynamics versus physical connectivity of complex networks

B56

Avraam Tapinos and Pedro Mendes. Clustering Systems Biology Models Through Time Series

B57

Alessandra Tiengo, Nicola Barbarini, Caterina Temporini, Gabriella Massolini and Paolo Magni. Phosphopeptides Identification: An Automated Perl Procedure

B58

Anders Wallqvist, Xin Fang and Jaques Reifman. A systems biology approach to study drug-induced growth inhibition of Mycobacterium tuberculosis

B59

Alessandro Dal Palù, Mathias Möhl, Sebastian Will and Bonnie Berger. CARNA: Alignment of RNA with Structures of Unlimited Complexity

B60

Uri Weingart, Yair Lavi and David Horn. Data Mining of Enzymes using Specific Peptides

B61

Christian Widmer, Jose Miguel Leiva-Murillo, Yasemin Altun and Gunnar Rätsch. Leveraging Sequence Classification by Taxonomy-based Multitask Learning

B62

Michał Woźniak, Jerzy Tiuryn and Limsoon Wong. Comparison of eight M. tuberculosis strains in the presence of drug resistance data

B63

Takuji Yamada, Ivica Letunic, Shujiro Okuda and Peer Bork. iPath: Interactive Pathways Explorer

B64

Jung Tay Yee and Christopher Workman. High throughput protein interaction screens uncover distinct aspects of the budding yeast interactome

B65

Xiaoqing You, Annie Titus, Fawn Wang, Kelly Li and Yu Wang. Developing TaqMan® real time PCR based assays for mouse copy number variation detection

B66

Jianyang Zeng, Jeffrey Boyles, Chittaranjan Tripathy, Lincong Wang, Anthony Yan, Pei Zhou and Bruce Donald. RDC-PANDA: a High-Resolution NMR Structure Determination Algorithm Starting with a Global Fold Calculated from Exact Solutions to the RDC Equations

B67

Zhizhuo Zhang, ChengWei Chang, Edwin Cheung and Wing-Kin Sung. Peak Oriented Motif Discovery Algorithm

B68

Yun Zheng. SeqTar: A Method for Predicting Small RNA Guided Cleavages Based on Deep Sequencing of Degradome of Polyadenylated Transcripts

B69

Shruthi Prabhakara and R. Acharya. Fuzzy Clustering of Metagenome Reads

B70

Chih-Hsien Yang and Chuan-Hsiung Chang. Bioinformatics discovery of inducible promoters from large-scale time series experiments for genetic circuit design

B71

Charles O'Donnell, Jerome Waldispuhl, Mieszko Lis, Srinivas Devadas, Susan Lindquist and Bonnie Berger. A method for probing the mutational landscape of amyloid structure

B72

Sylvia Melzer, Clemens Gröpl, Jan Muntel and Dörte Becher. Improving peptide identification in proteome analysis by retention time and secondary structure filtering approaches

B73

Valery Kirzhner, Svetlana Margulis and Abraham Korol. Large-scale comparisons of primate genomes on the above-gene level

B74

Satish Kumar, Chandan K. Singh and Rajib Bandopadhayay. 1, 3-Dihydroxy 9, 10 anthraquinone, an inhibitory drug molecule for Staphylococcus aureus infection, by targeting the HtsA receptor

B75

Nurcan Tuncbag, Attila Gursoy, Ruth Nussinov and Ozlem Keskin. Large scale construction of three-dimensional protein-protein complex structures

B76

Nurcan Tuncbag, Ozlem Keskin and Attila Gursoy. HotPOINT: Hot Spot Prediction Server for Protein Interfaces

B77

Sheng-Yu Chuang, Hsiao-Wen Wang and Yao-Ting Huang. A New Framework for Finding Translocations with Next Generation Sequencing

B78

Jonathan Goeke, Marcel Schulz and Martin Vingron. Pairwise Comparison of Regulatory Sequences

B79

Pinar Kanlikilicer, Berna Sariyar Akbulut and Elif Ozkirimli. Beta-lactamase ligand recognition - a comparative study